Publications
See also
Preprints
Titova AV,
Straw AD.
Contradictory behavioral effects of neuronal perturbations on behavioral responses to linearly polarized light in freely walking Drosophila.
bioRxiv (2024) doi:10.1101/2024.03.15.584848
Poehlmann A*,
Soselisa S*,
Fenk LM,
Straw AD.
A unifying model to predict multiple object orienting behaviors in tethered flies.
bioRxiv (2018) doi:10.1101/379651
Peer reviewed journal articles
2024
2023
Titova AV,
Kau BE,
Tibor S,
Mach J,
Vo-Doan TT,
Wittlinger M,
Straw AD.
Displacement experiments provide evidence for path integration in Drosophila.
Journal of Experimental Biology (2023) doi:10.1242/jeb.245289 Preprint on
bioRxiv.
2022
Kellner MJ*,
Ross JJ*,
Schnabl J*,
Dekens MPS,
Matl M,
Heinen R,
Grishkovskaya I,
Bauer B,
Stadlmann J,
Menéndez-Arias L,
Straw AD,
Fritsche-Polanz R,
Traugott M,
Seitz T,
Zoufaly A,
Födinger M,
Wenisch C,
Zuber J,
Vienna Covid-19 Detection Initiative (VCDI),
Pauli A,
Brennecke J.
A Rapid, Highly Sensitive and Open-Access SARS-CoV-2 Detection Assay for Laboratory and Home Testing.
Frontiers in Molecular Biosciences (2022) doi:10.3389/fmolb.2022.801309 Preprint on
bioRxiv.
[frontiersin.org]
Alonso San Alberto D,
Rusch C,
Zhan Y,
Straw AD,
Montell C,
Riffell J.
The olfactory gating of visual preferences to human skin and visible spectra in mosquitoes.
Nature Communications 13(555) (2022) doi:10.1038/s41467-022-28195-x Preprint on
bioRxiv.
Cribellier A,
Straw AD,
Spitzen J,
Pieters RPM,
van Leeuwen JL,
Muijres FT.
Diurnal and nocturnal mosquitoes escape looming threats using distinct flight strategies.
Current Biology (2022) doi:10.1016/j.cub.2022.01.036 2021
Straw AD.
Review of methods for animal videography using camera systems that automatically move to follow the animal.
Integrative and Comparative Biology (2021) doi:10.1093/icb/icab126 Fernández A,
Straw A,
Distel M,
Leitgeb R,
Baltuska A,
Verhoef AJ.
Dynamic real-time subtraction of stray-light and background for multiphoton imaging.
Biomedical Optics Express 12(1),
288-302 (2021) doi:10.1364/BOE.403255 2020
Linneweber GA,
Andriatsilavo M,
Dutta SB,
Bengochea M,
Hellbruegge L,
Liu G,
Ejsmont RK,
Straw AD,
Wernet M,
Hiesinger PR,
Hassan B.
A neurodevelopmental origin of behavioral individuality in the Drosophila visual system.
Science 367(6482),
1112-1119 (2020) doi:10.1126/science.aaw7182 [sciencemag.org]
2018
Dakin R*,
Segre PS*,
Straw AD,
Altshuler DL.
Morphology, muscle capacity, skill, and maneuvering ability in hummingbirds.
Science 359(6376),
653-657 (2018) doi:10.1126/science.aao7104 2017
Stowers JR*,
Hofbauer M*,
Bastien R,
Griessner J⁑,
Higgins P⁑,
Farooqui S⁑,
Fischer RM,
Nowikovsky K,
Haubensak W,
Couzin ID,
Tessmar-Raible K✎,
Straw AD✎.
Virtual Reality for Freely Moving Animals.
Nature Methods 14,
995–1002 (2017) doi:10.1038/nmeth.4399 [FreemoVR website]
2016
Segre PS*,
Dakin R*,
Read TJG,
Straw AD,
Altshuler DL.
Mechanical constraints on flight at high elevation decrease maneuvering performance of hummingbirds.
Current Biology 26(24),
3368-3374 (2016) doi:10.1016/j.cub.2016.10.028 2015
Segre P,
Dakin R,
Zordan VB,
Dickinson MH,
Straw AD,
Altshuler DL.
Burst muscle performance predicts the speed, acceleration, and turning performance of Anna's hummingbirds.
eLife 4,
e11159 (2015) doi:10.7554/eLife.11159 2014
Fenk LM*,
Poehlmann A*,
Straw AD.
Asymmetric processing of visual motion for simultaneous figure and background responses.
Current Biology 24(24),
2913-2919 (2014) doi:10.1016/j.cub.2014.10.042 Bath DE*,
Stowers JR*,
Hörmann D,
Poehlmann A,
Dickson BJ✎,
Straw AD✎.
FlyMAD: Rapid thermogenetic control of neuronal activity in freely-walking Drosophila.
Nature Methods 11(7),
756-762 (2014) doi:10.1038/nmeth.2973 Stowers JR,
Fuhrmann A,
Hofbauer M,
Streinzer M,
Schmid A,
Dickinson MH,
Straw AD.
Reverse engineering animal vision with virtual reality and genetics.
Computer 47(7),
38-45 (2014) doi:10.1109/MC.2014.190 Dell AI,
Bender JA,
Branson K,
Couzin ID,
de Polavieja GG,
Noldus LPJJ,
Perez-Escudero A,
Perona P,
Straw AD,
Wikelski M,
Brose U.
The role of automated tracking in ecology.
Trends in Ecology and Evolution 29(7),
417-428 (2014) doi:10.1016/j.tree.2014.05.004 Fuller SB,
Straw AD,
Peek MY,
Murray RM,
Dickinson MH.
Flying Drosophila stabilize their vision-based velocity controller by sensing wind with their antennae.
PNAS (2014) doi:10.1073/pnas.1323529111 2013
Censi A*,
Straw AD*,
Sayaman RW,
Murray RM,
Dickinson MH.
Discriminating external and internal causes for heading changes in freely flying Drosophila.
PLOS Computational Biology 9(2),
1-14 (2013) doi:10.1371/journal.pcbi.1002891 Zantke J,
Ishikawa-Fujiwara T,
Arboleda E,
Lohs C,
Shipany K,
Hallay N,
Straw AD,
Todo T,
Tessmar-Raible K.
Circadian and circalunar clock interactions in a marine annelid.
Cell Reports (2013) doi:10.1016/j.celrep.2013.08.031 2011
Straw AD,
Branson K,
Neumann TR,
Dickinson MH.
Multicamera Realtime 3D Tracking of Multiple Flying Animals.
Journal of The Royal Society Interface 8(11),
395-409 (2011) doi:10.1098/rsif.2010.0230 Mamiya A,
Straw AD,
Tómasson E,
Dickinson MH.
Active and Passive Antennal Movements during Visually Guided Steering in Flying Drosophila.
Journal of Neuroscience (2011) doi:10.1523/JNEUROSCI.0498-11.2011 2010
Straw AD,
Lee S,
Dickinson MH.
The visual control of altitude in flying Drosophila.
Current Biology 20(17),
1550-1556 (2010) doi:10.1016/j.cub.2010.07.025 Robie AA,
Straw AD,
Dickinson MH.
Object preference by walking fruit flies, Drosophila melanogaster, is mediated by vision and graviperception.
Journal of Experimental Biology (2010) doi:10.1242/jeb.041749 Maimon G,
Straw AD,
Dickinson MH.
Active flight increases the gain of visual motion processing in Drosophila.
Nature Neuroscience 13(3),
393-399 (2010) doi:10.1038/nn.2492 2009
Straw AD,
Dickinson MH.
Motmot, an open-source toolkit for realtime video acquisition and analysis.
Source Code Biol Med 4(5) (2009) doi:10.1186/1751-0473-4-5 Fry SN,
Rohrseitz N,
Straw AD,
Dickinson MH.
Visual flight speed control in Drosophila melanogaster.
J Exp Biol (2009) doi:10.1242/jeb.020768 2008
Straw AD,
Rainsford T,
O'Carroll DC.
Contrast sensitivity of insect motion detectors to natural images.
Journal of Vision (2008) doi:10.1167/8.3.32 Straw AD.
Vision Egg: An Open-Source Library for Realtime Visual Stimulus Generation.
Front Neuroinformatics 2(4) (2008) doi:10.3389/neuro.11.004.2008 Maimon G,
Straw AD,
Dickinson MH.
A simple vision-based algorithm for decision making in flying Drosophila.
Current Biology (2008) doi:10.1016/j.cub.2008.02.054 Dickson WB,
Straw AD,
Dickinson MH.
Integrative model of Drosophila flight.
AIAA Journal (2008) doi:10.2514/1.29862 Fry SN,
Rohrseitz N,
Straw AD,
Dickinson MH.
TrackFly: Virtual reality for a behavioral system analysis in free-flying fruit flies.
J Neurosci Meth (2008) doi:10.1016/j.jneumeth.2008.02.016 2006
Straw AD,
Warrant EJ,
O'Carroll DC.
A bright zone in male hoverfly (Eristalis tenax) eyes and associated faster motion detection and increased contrast sensitivity.
J Exp Biol (2006) doi:10.1242/jeb.02517 2005
Shoemaker P,
O'Carroll DC,
Straw AD.
Velocity constancy and models for wide-field motion detection in insects.
Biological Cybernetics (2005) doi:10.1007/s00422-005-0007-y 2004
Fry SN,
Mueller P,
Baumann HJ,
Straw AD,
Bichsel M,
Robert D.
Context-dependent stimulus presentation to freely moving animals in 3D.
J Neurosci Meth (2004) doi:10.1016/j.jneumeth.2003.12.012 symbols
* equal contribution
⁑ equal contribution
✎ co-corresponding author
Peer reviewed conference papers
2010
Han S,
Censi A,
Straw AD,
Murray RM.
A Bio-Plausible Design for Visual Pose Stabilization.
Proceedings of the 2010 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS),
5679–5686 (2010) doi:10.1109/IROS.2010.5652857 2009
Han S,
Straw AD,
Dickinson MH,
Murray RM.
A real-time helicopter testbed for insect-inspired visual flight control.
Robotics and Automation, 2009. ICRA '09. IEEE International Conference on,
3055-3060 (2009) doi:10.1109/ROBOT.2009.5152667 2007
Epstein M,
Waydo S,
Fuller SB,
Dickson W,
Straw AD,
Dickinson MH,
Murray RM.
Biologically Inspired Feedback Design for Drosophila Flight.
American Control Conference, 2007. ACC '07,
3395-3401 (2007) doi:10.1109/ACC.2007.4282971 2006
Dickson W,
Straw AD,
Poelma C,
Dickinson MH.
An Integrative Model of Insect Flight Control.
44th AIAA Aerospace Sciences Meeting and Exhibit (2006) doi:10.2514/6.2006-34 2005
Rajesh S,
Straw AD,
O'Carroll DC,
Abbott D.
Effect of spatial sampling on pattern noise in insect-based motion detection.
Proc. SPIE 5649, Smart Structures, Devices, and Systems II, 811 (March 09, 2005) (2005) doi:10.1117/12.598178 Rajesh S,
Straw AD,
O'Carroll DC,
Abbott D.
Effects of compressive nonlinearity on insect-based motion detection.
Proc. SPIE 5649, Smart Structures, Devices, and Systems II, 798 (March 09, 2005) (2005) doi:10.1117/12.598177 2001
Shoemaker PA,
O'Carroll DC,
Straw AD.
Implementation of visual motion detection with contrast adaptation.
Proc. SPIE 4591, Electronics and Structures for MEMS II, 316 (November 21, 2001) (2001) doi:10.1117/12.449162 Data
Hellekes K,
Villalba S,
Stowers JR,
Graf A,
Panser K,
Campione E,
Straw AD.
A dataset of 3D fly (Drosophila melanogaster) flight trajectories to study the role of neuropeptide degradation in visuo-motor behaviors.
doi:10.5281/zenodo.29193 link Online resources
Braincode website - Automatic segmentations of brain regions based on enhancer clustering.
link FlyMAD - the Fly Mind Altering Device - website.
link Models of Visual Fly Motion Detection and Behavior.
link Software and Hardware
Strand Camera - low-latency single camera acquisition and tracking software.
link Braid - multi-camera acquisition and tracking software.
link Miriam - open-source isothermal reaction instrument featuring realtime fluorescence readout in a 96-well plate format.
link colorimetry.net - Automatic image enhancement for Hydroxy naphthol blue (HNB) dyes.
link FreemoVR - Virtual Reality for Freely Moving Animals.
link Flydra - multi-camera acquisition and tracking software.
link BUI Backend - library to write user interfaces in the browser.
link VisonEgg - simple visual stimulus generation library (Python).
link PyMVG - Python Multiple View Geometry (Python).
link Models of Visual Fly Motion Detection and Behavior (Python).
link Neuron catalog web application (Javascript/Coffeescript).
link FlyMAD - the Fly Mind Altering Device source code (Python).
link Motmot Camera Utilities (Python/C/C++).
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